Genomic Location: not available for this species
NR annotation: CAB3977191.1, Splicing factor 3B subunit 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977191.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O75533 | Splicing factor 3B subunit 1 OS=Homo sapiens OX=9606 GN=SF3B1 PE=1 SV=3 |
| Q99NB9 | Splicing factor 3B subunit 1 OS=Mus musculus OX=10090 GN=Sf3b1 PE=1 SV=1 |
| O57683 | Splicing factor 3B subunit 1 OS=Xenopus laevis OX=8355 GN=sf3b1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004777 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20926 all species → | Htt_N-HEAT_1 | Huntingtin, N-terminal HEAT 1 | Repeat | Interproscan |
| PF08920 all species → | SF3b1 | Splicing factor 3B subunit 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038737 all species → | Family | Splicing factor 3B subunit 1-like | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR034085 all species → | Domain | TOG domain | Interproscan |
| IPR048411 all species → | Repeat | Huntingtin, N-terminal, HEAT repeats 1 | Interproscan |
| IPR015016 all species → | Domain | Splicing factor 3B subunit 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12097 all species → | SPLICING FACTOR 3B, SUBUNIT 1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000245 all species → | Biological Process | spliceosomal complex assembly | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0005686 all species → | Cellular Component | U2 snRNP | Interproscan |
| GO:0005689 all species → | Cellular Component | U12-type spliceosomal complex | Interproscan |
| GO:0071004 all species → | Cellular Component | U2-type prespliceosome | Interproscan |
| GO:0071013 all species → | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12828 | SF3B1, SAP155; splicing factor 3B subunit 1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3977191.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
