Genomic Location: not available for this species
NR annotation: CAB3977311.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977311.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9SEE4 | Pirin-like protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1 |
| O00625 | Pirin OS=Homo sapiens OX=9606 GN=PIR PE=1 SV=1 |
| Q5M827 | Pirin OS=Rattus norvegicus OX=10116 GN=Pir PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005996 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05726 all species → | Pirin_C | Pirin C-terminal cupin domain | Domain | Interproscan |
| PF02678 all species → | Pirin | Pirin | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008778 all species → | Domain | Pirin, C-terminal domain | Interproscan |
| IPR012093 all species → | Family | Pirin | Interproscan |
| IPR011051 all species → | Homologous_superfamily | RmlC-like cupin domain superfamily | Interproscan |
| IPR014710 all species → | Homologous_superfamily | RmlC-like jelly roll fold | Interproscan |
| IPR003829 all species → | Domain | Pirin, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13903 all species → | PIRIN-RELATED | Interproscan |
CAB3977311.1. This gene does have a gene model — the search simply returned no hit.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06911 | PIR; quercetin 2,3-dioxygenase | EC:1.13.11.24 | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of CAB3977311.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
