Genomic Location: not available for this species
NR annotation: CAB3977379.1, poly(ADP-ribose) glycohydrolase-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977379.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O88622 | Poly(ADP-ribose) glycohydrolase OS=Mus musculus OX=10090 GN=Parg PE=1 SV=2 |
| Q86W56 | Poly(ADP-ribose) glycohydrolase OS=Homo sapiens OX=9606 GN=PARG PE=1 SV=1 |
| O02776 | Poly(ADP-ribose) glycohydrolase OS=Bos taurus OX=9913 GN=PARG PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002028 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05028 all species → | PARG_cat_C | Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold | Domain | Interproscan |
| PF20811 all species → | PARG_cat_N | Poly (ADP-ribose) glycohydrolase (PARG), helical domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR046372 all species → | Domain | Poly (ADP-ribose) glycohydrolase (PARG), catalytic domain | Interproscan |
| IPR048362 all species → | Domain | Poly (ADP-ribose) glycohydrolase, helical domain | Interproscan |
| IPR007724 all species → | Family | Poly(ADP-ribose) glycohydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12837 all species → | POLY ADP-RIBOSE GLYCOHYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004649 all species → | Molecular Function | poly(ADP-ribose) glycohydrolase activity | Interproscan |
| GO:0006282 all species → | Biological Process | regulation of DNA repair | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0009225 all species → | Biological Process | nucleotide-sugar metabolic process | Interproscan |
| GO:1990966 all species → | Biological Process | ATP generation from poly-ADP-D-ribose | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07759 | PARG; poly(ADP-ribose) glycohydrolase | EC:3.2.1.143 | Base excision repair | ko03410 | deepkoala |
Transcript abundance of CAB3977379.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 7.31 | 15.55 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 6.20 | 15.85 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 8.13 | 16.00 | |
| apical branchlet · Control at T0 | 4 | 1 | 2.05 | 8.19 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
