Genomic Location: not available for this species
NR annotation: CAB3977481.1, Pre-mRNA-splicing regulator WTAP [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977481.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q15007 | Pre-mRNA-splicing regulator WTAP OS=Homo sapiens OX=9606 GN=WTAP PE=1 SV=2 |
| Q9ER69 | Pre-mRNA-splicing regulator WTAP OS=Mus musculus OX=10090 GN=Wtap PE=1 SV=3 |
| Q6P4K5 | Pre-mRNA-splicing regulator WTAP OS=Xenopus tropicalis OX=8364 GN=wtap PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004659 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17098 all species → | Wtap | WTAP/Mum2p family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033757 all species → | Family | Pre-mRNA-splicing regulator WTAP | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15217 all species → | WILMS' TUMOR 1-ASSOCIATING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000381 all species → | Biological Process | regulation of alternative mRNA splicing, via spliceosome | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0080009 all species → | Biological Process | obsolete mRNA methylation | Interproscan |
CAB3977481.1.Transcript abundance of CAB3977481.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
