Genomic Location: not available for this species
NR annotation: CAB3977492.1, RING finger 166-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977492.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8BFW4 | E3 ubiquitin-protein ligase TRIM65 OS=Mus musculus OX=10090 GN=Trim65 PE=1 SV=1 |
| Q61510 | E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus OX=10090 GN=Trim25 PE=1 SV=2 |
| Q8K243 | E3 ubiquitin-protein ligase TRIM68 OS=Mus musculus OX=10090 GN=Trim68 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009555 (this species only) |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 activity RING|U-box · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13445 all species → | zf-RING_UBOX | RING-type zinc-finger | Domain | Interproscan |
| PF05605 all species → | zf-Di19 | Drought induced 19 protein (Di19), zinc-binding | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR027370 all species → | Domain | Zinc finger, RING-type, eukaryotic | Interproscan |
| IPR051438 all species → | Family | RNF E3 ubiquitin-protein ligase | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR008598 all species → | Domain | Drought induced 19 protein type, zinc-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46016 all species → | ZINC FINGER, RING/FYVE/PHD-TYPE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000209 all species → | Biological Process | protein polyubiquitination | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
CAB3977492.1.Transcript abundance of CAB3977492.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 196.94 | 415.76 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 188.17 | 279.20 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 182.03 | 291.18 | |
| apical branchlet · Control at T0 | 4 | 3 | 175.24 | 338.38 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
