Genomic Location: not available for this species
NR annotation: CAB3977494.1, probable histone-binding Caf1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977494.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3MHL3 | Histone-binding protein RBBP4 OS=Bos taurus OX=9913 GN=RBBP4 PE=1 SV=3 |
| Q09028 | Histone-binding protein RBBP4 OS=Homo sapiens OX=9606 GN=RBBP4 PE=1 SV=3 |
| Q60972 | Histone-binding protein RBBP4 OS=Mus musculus OX=10090 GN=Rbbp4 PE=1 SV=5 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006269 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12265 all species → | CAF1C_H4-bd | Histone-binding protein RBBP4 or subunit C of CAF1 complex | Repeat | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR022052 all species → | Domain | Histone-binding protein RBBP4, N-terminal | Interproscan |
| IPR050459 all species → | Family | WD repeat RBAP46/RBAP48/MSI1 | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR020472 all species → | Repeat | G-protein beta WD-40 repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22850 all species → | WD40 REPEAT FAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0016575 all species → | Biological Process | obsolete histone deacetylation | Interproscan |
| GO:0016581 all species → | Cellular Component | NuRD complex | Interproscan |
| GO:0031491 all species → | Molecular Function | nucleosome binding | Interproscan |
| GO:0035098 all species → | Cellular Component | ESC/E(Z) complex | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10752 | RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3977494.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 43.19 | 100.29 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 33.21 | 101.35 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 17.54 | 34.35 | |
| apical branchlet · Control at T0 | 4 | 3 | 5.89 | 13.66 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
