Genomic Location: not available for this species
NR annotation: CAB3977639.1, lipopolysaccharide-responsive and beige-like anchor, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977640.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8NFP9 | Neurobeachin OS=Homo sapiens OX=9606 GN=NBEA PE=1 SV=3 |
| P50851 | Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens OX=9606 GN=LRBA PE=1 SV=4 |
| Q9EPN1 | Neurobeachin OS=Mus musculus OX=10090 GN=Nbea PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002584 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14844 all species → | PH_BEACH | PH domain associated with Beige/BEACH | Domain | Interproscan |
| PF06469 all species → | DUF1088 | Neurobeachin-like, DUF1088 | Domain | Interproscan |
| PF02138 all species → | Beach | Beige/BEACH domain | Family | Interproscan |
| PF20426 all species → | NBCH_WD40 | Neurobeachin beta propeller domain | Repeat | Interproscan |
| PF15787 all species → | DUF4704 | Neurobeachin/BDCP, DUF4704 alpha solenoid region | Repeat | Interproscan |
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023362 all species → | Domain | PH-BEACH domain | Interproscan |
| IPR050865 all species → | Family | BEACH Domain-Containing | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR000409 all species → | Domain | BEACH domain | Interproscan |
| IPR010508 all species → | Domain | Neurobeachin-like, DUF1088 | Interproscan |
| IPR046851 all species → | Domain | Neurobeachin, beta-propeller domain | Interproscan |
| IPR036372 all species → | Homologous_superfamily | BEACH domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR031570 all species → | Domain | Neurobeachin/BDCP, DUF4704 | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13743 all species → | BEIGE/BEACH-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0008104 all species → | Biological Process | protein localization | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0019901 all species → | Molecular Function | protein kinase binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
CAB3977640.1.Transcript abundance of CAB3977640.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
