Genomic Location: not available for this species
NR annotation: CAB3978110.1, Solute carrier family 28 member 3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3978110.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9UA35 | Solute carrier family 28 member 3 OS=Eptatretus stoutii OX=7765 GN=SLC28A3 PE=2 SV=1 |
| Q8VIH3 | Solute carrier family 28 member 3 OS=Rattus norvegicus OX=10116 GN=Slc28a3 PE=2 SV=1 |
| Q9ERH8 | Solute carrier family 28 member 3 OS=Mus musculus OX=10090 GN=Slc28a3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001071 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01773 all species → | Nucleos_tra2_N | Na+ dependent nucleoside transporter N-terminus | Family | Interproscan |
| PF07662 all species → | Nucleos_tra2_C | Na+ dependent nucleoside transporter C-terminus | Family | Interproscan |
| PF07670 all species → | Gate | Nucleoside recognition | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002668 all species → | Domain | Concentrative nucleoside transporter N-terminal domain | Interproscan |
| IPR011657 all species → | Domain | Concentrative nucleoside transporter C-terminal domain | Interproscan |
| IPR011642 all species → | Domain | Nucleoside transporter/FeoB GTPase, Gate domain | Interproscan |
| IPR008276 all species → | Family | Concentrative nucleoside transporter | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10590 all species → | SODIUM/NUCLEOSIDE COTRANSPORTER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005337 all species → | Molecular Function | nucleoside transmembrane transporter activity | Interproscan |
| GO:0005415 all species → | Molecular Function | nucleoside:sodium symporter activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0015293 all species → | Molecular Function | symporter activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:1901642 all species → | Biological Process | nucleoside transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11536 | SLC28A; pyrimidine nucleoside transport protein | - | Transporters | ko02000 | deepkoala |
Transcript abundance of CAB3978110.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
