Genomic Location: not available for this species
NR annotation: CAB3978251.1, phosphatidylinositol phosphatase PTPRQ-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3978251.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8AV58 | Protein sidekick-1 OS=Gallus gallus OX=9031 GN=SDK1 PE=1 SV=1 |
| O88488 | Phosphatidylinositol phosphatase PTPRQ OS=Rattus norvegicus OX=10116 GN=Ptprq PE=1 SV=1 |
| Q9UMZ3 | Phosphatidylinositol phosphatase PTPRQ OS=Homo sapiens OX=9606 GN=PTPRQ PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000017 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09294 all species → | Interfer-bind | Interferon-alpha/beta receptor, fibronectin type III | Domain | Interproscan |
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF00629 all species → | MAM | MAM domain, meprin/A5/mu | Domain | Interproscan |
| PF07885 all species → | Ion_trans_2 | Ion channel | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR015373 all species → | Domain | Interferon/interleukin receptor domain | Interproscan |
| IPR000998 all species → | Domain | MAM domain | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR013099 all species → | Domain | Potassium channel domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44170 all species → | PROTEIN SIDEKICK | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0098609 all species → | Biological Process | cell-cell adhesion | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
CAB3978251.1.Transcript abundance of CAB3978251.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 3.04 | 8.81 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 0.98 | 2.01 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.08 | 0.41 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.34 | 5.36 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
