Gene detail

Detailed information of CAB3978299.1 in Paramuricea clavata

Genomic Location: :...
NR annotation: CAB3978299.1, 116 kDa U5 small nuclear ribonucleo component-like [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q15029	116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens OX=9606 GN=EFTUD2 PE=1 SV=1
Q5R6E0	116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii OX=9601 GN=EFTUD2 PE=2 SV=1
Q5F3X4	116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus OX=9031 GN=EFTUD2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16004	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component N-terminus	Family	Interproscan
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031950	Domain	116kDa U5 small nuclear ribonucleoprotein component, N-terminal	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR044121	Domain	Snu114, GTP-binding domain	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0030623	Molecular Function	U5 snRNA binding	Interproscan
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12852	EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component	-	Spliceosome	ko03041	deepkoala