Genomic Location: not available for this species
NR annotation: CAB3978423.1, N-sulphoglucosamine sulphohydrolase-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3978423.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P51688 | N-sulphoglucosamine sulphohydrolase OS=Homo sapiens OX=9606 GN=SGSH PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004503 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00884 all species → | Sulfatase | Sulfatase | Family | Interproscan |
| PF16347 all species → | SGSH_C | N-sulphoglucosamine sulphohydrolase, C-terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000917 all species → | Domain | Sulfatase, N-terminal | Interproscan |
| IPR017850 all species → | Homologous_superfamily | Alkaline-phosphatase-like, core domain superfamily | Interproscan |
| IPR032506 all species → | Domain | N-sulphoglucosamine sulphohydrolase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43108 all species → | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005539 all species → | Molecular Function | glycosaminoglycan binding | Interproscan |
| GO:0006027 all species → | Biological Process | glycosaminoglycan catabolic process | Interproscan |
| GO:0008449 all species → | Molecular Function | N-acetylglucosamine-6-sulfatase activity | Interproscan |
| GO:0016250 all species → | Molecular Function | N-sulfoglucosamine sulfohydrolase activity | Interproscan |
| GO:0030200 all species → | Biological Process | heparan sulfate proteoglycan catabolic process | Interproscan |
CAB3978423.1.Transcript abundance of CAB3978423.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
