Genomic Location: not available for this species
NR annotation: CAB3978484.1, RCC1-like G exchanging factor [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3978484.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9CYF5 | RCC1-like G exchanging factor-like protein OS=Mus musculus OX=10090 GN=Rcc1l PE=1 SV=1 |
| Q96I51 | RCC1-like G exchanging factor-like protein OS=Homo sapiens OX=9606 GN=RCC1L PE=1 SV=3 |
| Q3MHW0 | Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus OX=9913 GN=SERGEF PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006857 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13540 all species → | RCC1_2 | Regulator of chromosome condensation (RCC1) repeat | Repeat | Interproscan |
| PF00415 all species → | RCC1 | Regulator of chromosome condensation (RCC1) repeat | Repeat | Interproscan |
| PF00001 all species → | 7tm_1 | 7 transmembrane receptor (rhodopsin family) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000408 all species → | Repeat | Regulator of chromosome condensation, RCC1 | Interproscan |
| IPR009091 all species → | Homologous_superfamily | Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | Interproscan |
| IPR000276 all species → | Family | G protein-coupled receptor, rhodopsin-like | Interproscan |
| IPR017452 all species → | Domain | GPCR, rhodopsin-like, 7TM | Interproscan |
| IPR053035 all species → | Family | Mitochondrial GEF domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46337 all species → | RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004930 all species → | Molecular Function | G protein-coupled receptor activity | Interproscan |
| GO:0007186 all species → | Biological Process | G protein-coupled receptor signaling pathway | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005743 all species → | Cellular Component | mitochondrial inner membrane | Interproscan |
| GO:0019843 all species → | Molecular Function | rRNA binding | Interproscan |
| GO:0070131 all species → | Biological Process | positive regulation of mitochondrial translation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08444 | ADGRE3, EMR3; adhesion G protein-coupled receptor E3 | - | G protein-coupled receptors | ko04030 | deepkoala |
Transcript abundance of CAB3978484.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 4.78 | 13.07 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 2.48 | 7.57 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.09 | 0.46 | |
| apical branchlet · Control at T0 | 4 | 2 | 4.68 | 17.05 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
