Genomic Location: not available for this species
NR annotation: CAB3978527.1, Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3978527.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6PFM0 | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio OX=7955 GN=jmjd6 PE=2 SV=2 |
| Q6GND3 | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A OS=Xenopus laevis OX=8355 GN=jmjd6-a PE=2 SV=1 |
| Q6NYC1 | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens OX=9606 GN=JMJD6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005035 (this species only) |
| Ubiquitin family | UBD|Other|SH3 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02373 all species → | JmjC | JmjC domain, hydroxylase | Domain | Interproscan |
| PF00621 all species → | RhoGEF | RhoGEF domain | Domain | Interproscan |
| PF14604 all species → | SH3_9 | Variant SH3 domain | Domain | Interproscan |
| PF03114 all species → | BAR | BAR domain | Domain | Interproscan |
| PF00018 all species → | SH3_1 | SH3 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR051492 all species → | Family | Dynamin-binding and Rho GEF | Interproscan |
| IPR003347 all species → | Domain | JmjC domain | Interproscan |
| IPR004148 all species → | Domain | BAR domain | Interproscan |
| IPR000219 all species → | Domain | Dbl homology (DH) domain | Interproscan |
| IPR036274 all species → | Homologous_superfamily | HR1 repeat superfamily | Interproscan |
| IPR027267 all species → | Homologous_superfamily | AH/BAR domain superfamily | Interproscan |
| IPR035899 all species → | Homologous_superfamily | Dbl homology (DH) domain superfamily | Interproscan |
| IPR010504 all species → | Domain | Arfaptin homology (AH) domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22834 all species → | NUCLEAR FUSION PROTEIN FUS2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0019904 all species → | Molecular Function | protein domain specific binding | Interproscan |
CAB3978527.1.Transcript abundance of CAB3978527.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 8.07 | 21.37 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 3.24 | 14.79 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.59 | 2.95 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.66 | 2.65 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
