Genomic Location: not available for this species
NR annotation: CAB3978559.1, trimeric intracellular cation channel type [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3978559.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9H6F2 | Trimeric intracellular cation channel type A OS=Homo sapiens OX=9606 GN=TMEM38A PE=1 SV=1 |
| A5A6S6 | Trimeric intracellular cation channel type A OS=Oryctolagus cuniculus OX=9986 GN=TMEM38A PE=1 SV=1 |
| Q3TMP8 | Trimeric intracellular cation channel type A OS=Mus musculus OX=10090 GN=Tmem38a PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007190 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05197 all species → | TRIC | TRIC channel | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007866 all species → | Family | TRIC channel | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12454 all species → | TRIMERIC INTRACELLULAR CATION CHANNEL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005267 all species → | Molecular Function | potassium channel activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0042802 all species → | Molecular Function | identical protein binding | Interproscan |
| GO:0071805 all species → | Biological Process | potassium ion transmembrane transport | Interproscan |
CAB3978559.1.Transcript abundance of CAB3978559.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
