Gene detail

Detailed information of CAB3978560.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3978560.1, indian hedgehog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3978560.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97812	Indian hedgehog protein OS=Mus musculus OX=10090 GN=Ihh PE=1 SV=2
Q91611	Desert hedgehog protein B OS=Xenopus laevis OX=8355 GN=dhh-b PE=2 SV=1
Q14623	Indian hedgehog protein OS=Homo sapiens OX=9606 GN=IHH PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001930 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01079 all species →	Hint	Hint module	Family	Interproscan
PF01085 all species →	HH_signal	Hedgehog amino-terminal signalling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009045 all species →	Homologous_superfamily	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Interproscan
IPR001657 all species →	Family	Hedgehog protein	Interproscan
IPR001767 all species →	Domain	Hedgehog protein, Hint domain	Interproscan
IPR050387 all species →	Family	Hedgehog Signaling	Interproscan
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR003586 all species →	Domain	Hint domain C-terminal	Interproscan
IPR006141 all species →	PTM	Intein N-terminal splicing region	Interproscan
IPR000320 all species →	Domain	Hedgehog, N-terminal signalling domain	Interproscan
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11889 all species →	HEDGEHOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0016539 all species →	Biological Process	intein-mediated protein splicing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3978560.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3978560.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

9TPM > 0

4Conditions

97.6Max TPM

17.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	29.35	76.74
apical branchlet · Temperature treatment at T0	6	3	24.59	97.56
apical branchlet · Temperature treatment at T25	5	1	1.38	6.90
apical branchlet · Control at T0	4	1	7.28	29.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	76.74
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	42.06
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	39.21
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	18.09
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	97.56
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	35.00
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	15.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	6.90
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	29.11
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.