Gene detail

Detailed information of CAB3978584.1 in Paramuricea clavata

Genomic Location: pcla8_s000141:29906...32151
NR annotation: CAB3978584.1, cysteine-rich 2-binding [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PACLA_8A049117

ATGGCTTTTGAAAGGTGTGAAACTGTTATCCCTAGCACAGATGAAAAGGACGCTGTTGTATGCTATTGTGACAAAAATATAACGCCAAGTATGTTGAAATGCTCGAAATGTCAAAAACTATTTCATTCTACTTGCTTGAAAAACGGACGGCCGAGTAATTTTAAAGGCGACATATTCTTCGAGTTTACTTGCGTGAAATGCTCCGATACAGGGAAAGAAGAATCCAAACGAAAATCAATGAACTGGCTGCAAGTCGTTTATTTAGCCTTGTATAATCTCATATGCCGGGGGAGCGGACGGAAGGGTTATTTTCGCTGGAAGGACGATTTATGTCAGTTTATAGAGCAAAATTGGAATATTTTTCACGCAGATAAGAAGAAGACATCGTCTTGGTGTAGTACAGTTGCAGGAACATTGTCTACAAATTGTCCAAAGATTTTTAAAAGCGGACAGAAAGAATTTAAAGAAGGTGGATGGTGGACGCTACAGGAAGTGCTCCCCCCGTCCGAGAAGCCGGAAGTGATTACGCCTGGGTTTAATCTACGGAGGAGAAAGAAAGGTGGACATGCGCGGACGGGGGAGGCGAACAAGAAACGTAGGGTGGAAATTTTGCAGAATGGAGGAACTGCTGAGTCAGCAGAAAATCACGAAGCGGGAAAATTAGTTGAGATGGAAAAACTGAAACAATCTGAGAATATGACCGAAAGAAATGGGACTCAAAACTCAGGTGTTTCAGAAACTGATATTGCTGATCAAATTAATACGTTCTTAGAAAGTAATGGTGATATCTTAGAATTAGACATAGGTGACCTGGGAGGGATGGATGAAATTTTTGATAATTTTGATCACACCAGCGCGGAAGAGTCTTTGCTTTCTAGTTTTACACAAGTAAATGACCAAGTTGTTGATACTAAAACAGAGACTAAACTGGATGAATGTAAACAGGTGCCAAGTGCCAAACAAGAGAGGGTGATAGTTCTTGATCCGAAAGATTTGAGCAGCAGCCAGCCCTCTACCTCGACAATGGAAGATGGCAAAGAAGTCGATAGTGATAATAGCGACGATGACGACGAGGCCAGTCAAGTTAAAAATCTAAGGACGATGCAGCCACATGAGGAAAGATTACTACTAGAGAAACTAAACAAGATAGATTCACCGGATCCAAGGGCAAGACGCTTGCGTGGGAAATTACTGCTCACCCGTCAAAAACGACAATGTGGTCTACCAGTGTTTGAACTTGATAGTGTTATCGAGAAATCAATAAACACCGTGTCACATTATGTGGTACAGAATGGTGAATGTACTTCTGTGTTAGATCCGTCTTCACAAAATACTGAACCACAGTCAGAGGTAGCTAGTAAACCGCAAAGAACTACACAGGTCAAGCATGATAGAATTCTGGATCGCTTCATGATGCAACCAGTTTCACAAAAACCTGTTAAACAGGTTAGCTTCTTAGGTCGTTTAATTGGCTGTAATCCGAGCGCGGTGAATCGAACTGTAACGAGTCCTTACACATCGCGGCTTTTAAAACCTTTCATTTGTCGGGATTTCGAAGCGACGCCAGTGAAACTTAAACTGTTGAAAGAAATCTGCTCGTGGTTTCAAACAAAGTATCCAAACCAGGAACTCCCCCCTGTAGTATTCGGTTCCATAGACTATTGCTACGTGCAACCGCATCACATTCCGGGGGTGAATGCGCTATGTCGTGAATTCTTCTGGCCAGGTATTGATCTATCAGAGTGCCTTCAGTACCCGGATTTCACGTGCGTGGTCCTTTACAAGAAGTTGATTATCGGATGTGCGTTCATGGTGCCCGATGTGAAATGTAACGAGGCTTATATCTCGTTCGTCGTTGTCCACCCCGACTGGAGAAGAGCTGGGATTGGATCATTCATGATTTATCATCTTATTCAAACGTGTTTGGGCAAAGATGTGACTCTTCACGTCTCTGCAAATAACCCGGCAATGTTGCTGTACCAGAAGTTTGGTTTCAAACCAGAGAGATTCGTTGTTGGCTTCTATGATCGCTACTACCCTTCTGATGGAGAACATTCCAGACATGCGTTTTTCCTTCGTCTTCAGAGATGA

Transcript

rna-PACLA_8A049117

caaaatggtggcCAAAACAAAATGAAACAGCATGATTGAAATGTGAACACGTTTTTTGGAGGGAAATATGGCTTTTGAAAGGTGTGAAACTGTTATCCCTAGCACAGATGAAAAGGACGCTGTTGTATGCTATTGTGACAAAAATATAACGCCAAGTATGTTGAAATGCTCGAAATGTCAAAAACTATTTCATTCTACTTGCTTGAAAAACGGACGGCCGAGTAATTTTAAAGGCGACATATTCTTCGAGTTTACTTGCGTGAAATGCTCCGATACAGGGAAAGAAGAATCCAAACGAAAATCAATGAACTGGCTGCAAGTCGTTTATTTAGCCTTGTATAATCTCATATGCCGGGGGAGCGGACGGAAGGGTTATTTTCGCTGGAAGGACGATTTATGTCAGTTTATAGAGCAAAATTGGAATATTTTTCACGCAGATAAGAAGAAGACATCGTCTTGGTGTAGTACAGTTGCAGGAACATTGTCTACAAATTGTCCAAAGATTTTTAAAAGCGGACAgaaagaatttaaagaaggtGGATGGTGGACGCTACAGGAAGTGCTCCCCCCGTCCGAGAAGCCGGAAGTGATTACGCCTGGGTTTAATCTACGGAGGAGAAAGAAAGGTGGACATGCGCGGACGGGGGAGGCGAACAAGAAACGTAGGGTGGAAATTTTGCAGAATGGAGGAACTGCTGAGTCAGCAGAAAATCACGAAGCGGGAAAATTAGTTGAGATGGAAAAACTGAAACAATCTGAGAATATGACCGAAAGAAATGGGACTCAAAACTCAGGTGTTTCAGAAACTGATATTGCTGATCAAATTAATACGTTCTTAGAAAGTAATGGTGATATCTTAGAATTAGACATAGGTGACCTGGGAGGGATGGatgaaatttttgataattttgatCACACCAGCGCGGAAGAGTCTTTGCTTTCTAGTTTTACACAAGTAAATGACCAAGTTGTTGATACTAAAACAGAGACTAAActggatgaatgtaaacagGTGCCAAGTGCCAAACAAGAGAGGGTGATAGTTCTTGATCCGAAAGATTTGAGCAGCAGCCAGCCCTCTACCTCGACAATGGAAGATGGCAAAGAAGTCGATAGTGATAATAGCGACGATGACGACGAGGCCAGTCAAGTTAAAAATCTAAGGACGATGCAGCCACATGAGGAAAGATTACTACTAGAGAAACTAAACAAGATAGATTCACCGGATCCAAGGGCAAGACGCTTGCGTGGGAAATTACTGCTCACCCGTCAAAAACGACAATGTGGTCTACCAGTGTTTGAACTTGATAGTGTTATCGAGAAATCAATAAACACCGTGTCACATTATGTGGTACAGAATGGTGAATGTACTTCTGTGTTAGATCCGTCTTCACAAAATACTGAACCACAGTCAGAGGTAGCTAGTAAACCGCAAAGAACTACACAGGTCAAGCATGATAGAATTCTGGATCGCTTCATGATGCAACCAGTTTCACAAAAACCTGTTAAACAGGTTAGCTTCTTAggtcgtttaattggctgtaaTCCGAGCGCGGTGAATCGAACTGTAACGAGTCCTTACACATCGCGGCTTTTAAAACCTTTCATTTGTCGGGATTTCGAAGCGACGCCAGTGAAACTTAAACTGTTGAAAGAAATCTGCTCGTGGTTTCAAACAAAGTATCCAAACCAGGAACTCCCCCCTGTAGTATTCGGTTCCATAGACTATTGCTACGTGCAACCGCATCACATTCCGGGGGTGAATGCGCTATGTCGTGAATTCTTCTGGCCAGGTATTGATCTATCAGAGTGCCTTCAGTACCCGGATTTCACGTGCGTGGTCCTTTACAAGAAGTTGATTATCGGATGTGCGTTCATGGTGCCCGATGTGAAATGTAACGAGGCTTATATCTCGTTCGTCGTTGTCCACCCCGACTGGAGAAGAGCTGGGATTGGATCATTCATGATTTATCATCTTATTCAAACGTGTTTGGGCAAAGATGTGACTCTTCACGTCTCTGCAAATAACCCGGCAATGTTGCTGTACCAGAAGTTTGGTTTCAAACCAGAGAGATTCGTTGTTGGCTTCTATGATCGCTACTACCCTTCTGATGGAGAACATTCCAGACATGCGTTTTTCCTTCGTCTTCAGAGATGATGGAATATTGGAATACCAGAACTTCAACATCGAACTGTGATACTTTCTGTGTTTAAATACCAACTGTAAATTGATGTAAAGATATGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H8E8	Cysteine-rich protein 2-binding protein OS=Homo sapiens OX=9606 GN=KAT14 PE=1 SV=3
Q8CID0	Cysteine-rich protein 2-binding protein OS=Mus musculus OX=10090 GN=Kat14 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005326 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20916 all species →	CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24537	KAT14; cysteine-rich protein 2-binding protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3978584.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

9TPM > 0

4Conditions

13.2Max TPM

1.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	2.00	8.40
apical branchlet · Temperature treatment at T0	6	3	2.66	13.23
apical branchlet · Temperature treatment at T25	5	1	0.25	1.24
apical branchlet · Control at T0	4	1	0.27	1.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.40
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.31
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.25
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.02
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	13.23
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.12
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.64
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	1.24
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.08
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.