Genomic Location: not available for this species
NR annotation: CAB3978702.1, vam6 Vps39 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3978702.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8R5L3 | Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1 |
| Q96JC1 | Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2 |
| Q9VEA2 | Vacuolar protein sorting-associated protein 39 homolog OS=Drosophila melanogaster OX=7227 GN=Vps39 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005043 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00780 all species → | CNH | CNH domain | Repeat | Interproscan |
| PF10366 all species → | Vps39_1 | Vacuolar sorting protein 39 domain 1 | Repeat | Interproscan |
| PF10367 all species → | Vps39_2 | Vacuolar sorting protein 39 domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000547 all species → | Repeat | Clathrin, heavy chain/VPS, 7-fold repeat | Interproscan |
| IPR001180 all species → | Domain | Citron homology (CNH) domain | Interproscan |
| IPR011047 all species → | Homologous_superfamily | Quinoprotein alcohol dehydrogenase-like superfamily | Interproscan |
| IPR032914 all species → | Family | Vam6/VPS39/TRAP1 family | Interproscan |
| IPR019452 all species → | Domain | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 | Interproscan |
| IPR019453 all species → | Domain | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12894 all species → | CNH DOMAIN CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006914 all species → | Biological Process | autophagy | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0034058 all species → | Biological Process | endosomal vesicle fusion | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20183 | VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB3978702.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 29.63 | 54.05 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 15.29 | 38.48 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 23.17 | 36.18 | |
| apical branchlet · Control at T0 | 4 | 2 | 5.85 | 19.08 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
