Genomic Location: not available for this species
NR annotation: CAB3979028.1, ubiquitin fubi and ribosomal S30 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3979028.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P62862 | Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein OS=Mus musculus OX=10090 GN=Fau PE=1 SV=2 |
| P62861 | Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=2 |
| G1T8A2 | Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein OS=Oryctolagus cuniculus OX=9986 GN=FAU PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006809 (this species only) |
| Ubiquitin family | ULD|UBL|NEDD8 · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_PIM · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00240 all species → | ubiquitin | Ubiquitin family | Domain | Interproscan |
| PF04758 all species → | Ribosomal_S30 | Ribosomal protein S30 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000626 all species → | Domain | Ubiquitin-like domain | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR006846 all species → | Family | Small ribosomal subunit protein eS30 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12650 all species → | 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0022627 all species → | Cellular Component | cytosolic small ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02983 | RP-S30e, RPS30; small subunit ribosomal protein S30e | - | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB3979028.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 515.89 | 861.64 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 450.80 | 753.51 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 397.75 | 672.23 | |
| apical branchlet · Control at T0 | 4 | 4 | 444.52 | 756.24 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
