Genomic Location: not available for this species
NR annotation: CAB3979035.1, deoxyribonuclease TATDN3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3979035.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q17R31 | Deoxyribonuclease TATDN3 OS=Homo sapiens OX=9606 GN=TATDN3 PE=1 SV=1 |
| A1A4M4 | Putative deoxyribonuclease TATDN3 OS=Bos taurus OX=9913 GN=TATDN3 PE=2 SV=1 |
| Q3U1C6 | Putative deoxyribonuclease TATDN3 OS=Mus musculus OX=10090 GN=Tatdn3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003474 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01026 all species → | TatD_DNase | TatD related DNase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018228 all species → | Conserved_site | Deoxyribonuclease, TatD-related, conserved site | Interproscan |
| IPR032466 all species → | Homologous_superfamily | Metal-dependent hydrolase | Interproscan |
| IPR001130 all species → | Family | 3'-5' ssDNA/RNA exonuclease TatD-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46317 all species → | HYDROLASE OF PHP SUPERFAMILY-RELATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016788 all species → | Molecular Function | hydrolase activity, acting on ester bonds | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03424 | tatD; TatD DNase family protein | EC:3.1.21.- | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of CAB3979035.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
