Genomic Location: not available for this species
NR annotation: CAB3979038.1, Transcriptional-regulating factor 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3979038.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q96PN7 | Transcriptional-regulating factor 1 OS=Homo sapiens OX=9606 GN=TRERF1 PE=1 SV=1 |
| Q8BXJ2 | Transcriptional-regulating factor 1 OS=Mus musculus OX=10090 GN=Trerf1 PE=1 SV=1 |
| Q6PJG2 | Mitotic deacetylase-associated SANT domain protein OS=Homo sapiens OX=9606 GN=MIDEAS PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003665 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01448 all species → | ELM2 | ELM2 domain | Family | Interproscan |
| PF00249 all species → | Myb_DNA-binding | Myb-like DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR000949 all species → | Domain | ELM2 domain | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR017884 all species → | Domain | SANT domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR051066 all species → | Family | Transcriptional Regulator and Corepressor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16089 all species → | REST COREPRESSOR COREST PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000118 all species → | Cellular Component | histone deacetylase complex | Interproscan |
| GO:0003714 all species → | Molecular Function | transcription corepressor activity | Interproscan |
| GO:0005667 all species → | Cellular Component | transcription regulator complex | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0045892 all species → | Biological Process | negative regulation of DNA-templated transcription | Interproscan |
CAB3979038.1.Transcript abundance of CAB3979038.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 8.08 | 22.44 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 3.75 | 13.55 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 1.38 | 5.73 | |
| apical branchlet · Control at T0 | 4 | 1 | 2.24 | 8.96 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
