Genomic Location: not available for this species
NR annotation: CAB3979103.1, F-actin-uncapping LRRC16A isoform X4 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3979103.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5VZK9 | F-actin-uncapping protein LRRC16A OS=Homo sapiens OX=9606 GN=CARMIL1 PE=1 SV=1 |
| Q6EDY6 | F-actin-uncapping protein LRRC16A OS=Mus musculus OX=10090 GN=Carmil1 PE=1 SV=2 |
| Q3UFQ8 | Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Mus musculus OX=10090 GN=Carmil3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003741 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13516 all species → | LRR_6 | Leucine Rich repeat | Repeat | Interproscan |
| PF17888 all species → | Carm_PH | Carmil pleckstrin homology domain | Domain | Interproscan |
| PF16000 all species → | CARMIL_C | CARMIL C-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051279 all species → | Family | Protein Phosphatase 1 Regulatory and Actin Interaction Protein | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR001611 all species → | Repeat | Leucine-rich repeat | Interproscan |
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR041245 all species → | Domain | CARMIL, pleckstrin homology domain | Interproscan |
| IPR031943 all species → | Domain | CARMIL, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24112 all species → | LEUCINE-RICH REPEAT, ISOFORM F-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0030027 all species → | Cellular Component | lamellipodium | Interproscan |
| GO:0034315 all species → | Biological Process | regulation of Arp2/3 complex-mediated actin nucleation | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20493 | LRRC16, CARMIL; leucine-rich repeat-containing protein 16 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB3979103.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 13.14 | 22.66 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 6.71 | 23.08 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 7.18 | 9.28 | |
| apical branchlet · Control at T0 | 4 | 3 | 9.31 | 20.62 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
