Genomic Location: not available for this species
NR annotation: CAB3979657.1, ribonuclease H1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3979657.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5BK46 | Ribonuclease H1 OS=Rattus norvegicus OX=10116 GN=Rnaseh1 PE=2 SV=1 |
| O70338 | Ribonuclease H1 OS=Mus musculus OX=10090 GN=Rnaseh1 PE=2 SV=1 |
| O60930 | Ribonuclease H1 OS=Homo sapiens OX=9606 GN=RNASEH1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004905 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00075 all species → | RNase_H | RNase H | Domain | Interproscan |
| PF01693 all species → | Cauli_VI | Caulimovirus viroplasmin | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037056 all species → | Homologous_superfamily | Ribonuclease H1, N-terminal domain superfamily | Interproscan |
| IPR002156 all species → | Domain | Ribonuclease H domain | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR011320 all species → | Domain | Ribonuclease H1, N-terminal | Interproscan |
| IPR017067 all species → | Family | Ribonuclease H1, eukaryote | Interproscan |
| IPR009027 all species → | Homologous_superfamily | Large ribosomal subunit protein bL9/RNase H1, N-terminal | Interproscan |
| IPR050092 all species → | Family | Ribonuclease H | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10642 all species → | RIBONUCLEASE H1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004523 all species → | Molecular Function | RNA-DNA hybrid ribonuclease activity | Interproscan |
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0043137 all species → | Biological Process | DNA replication, removal of RNA primer | Interproscan |
| GO:0090502 all species → | Biological Process | obsolete RNA phosphodiester bond hydrolysis, endonucleolytic | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03469 | rnhA, RNASEH1; ribonuclease HI | EC:3.1.26.4 | DNA replication proteins | ko03032 | deepkoala |
Transcript abundance of CAB3979657.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
