Genomic Location: not available for this species
NR annotation: CAB3979982.1, ubiquitin thioesterase ZRANB1 isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3979982.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7M760 | Ubiquitin thioesterase Zranb1 OS=Mus musculus OX=10090 GN=Zranb1 PE=2 SV=1 |
| Q9UGI0 | Ubiquitin thioesterase ZRANB1 OS=Homo sapiens OX=9606 GN=ZRANB1 PE=1 SV=2 |
| A6QP16 | Ubiquitin thioesterase ZRANB1 OS=Bos taurus OX=9913 GN=ZRANB1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009098 (this species only) |
| Ubiquitin family | UBD|ZnF|NZF · all ubiquitin genes in this species |
| Ubiquitin family | DUB|OTU|OTU · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00641 all species → | zf-RanBP | Zn-finger in Ran binding protein and others | Domain | Interproscan |
| PF02338 all species → | OTU | OTU-like cysteine protease | Family | Interproscan |
| PF18418 all species → | AnkUBD | Ankyrin ubiquitin-binding domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001876 all species → | Domain | Zinc finger, RanBP2-type | Interproscan |
| IPR003323 all species → | Domain | OTU domain | Interproscan |
| IPR041294 all species → | Domain | Ankyrin ubiquitin-binding domain | Interproscan |
| IPR051346 all species → | Family | OTU Domain-Containing Deubiquitinase | Interproscan |
| IPR049768 all species → | Domain | Ubiquitin thioesterase ZRANB1, ovarian tumor domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13367 all species → | UBIQUITIN THIOESTERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004843 all species → | Molecular Function | cysteine-type deubiquitinase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0070530 all species → | Molecular Function | K63-linked polyubiquitin modification-dependent protein binding | Interproscan |
| GO:0071947 all species → | Biological Process | protein deubiquitination involved in ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11862 | ZRANB1, TRABID; ubiquitin thioesterase ZRANB1 | EC:3.4.19.12 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB3979982.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 18.05 | 31.37 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 9.21 | 15.90 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 2.71 | 11.23 | |
| apical branchlet · Control at T0 | 4 | 2 | 10.12 | 23.66 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
