Gene detail

Detailed information of CAB3980206.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3980206.1, protocadherin [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3980206.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8V7Q1	Protocadherin-like protein OS=Acropora millepora OX=45264 PE=1 SV=1
O15943	Neural-cadherin OS=Drosophila melanogaster OX=7227 GN=CadN PE=1 SV=2
Q14517	Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000983 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF01049 all species →	CADH_Y-type_LIR	Cadherin, Y-type LIR-motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000233 all species →	Domain	Cadherin, Y-type LIR-motif	Interproscan
IPR027397 all species →	Homologous_superfamily	Catenin binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016339 all species →	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0034332 all species →	Biological Process	adherens junction organization	Interproscan
GO:0044331 all species →	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3980206.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3980206.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

17TPM > 0

4Conditions

57.4Max TPM

15.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	20.81	43.79
apical branchlet · Temperature treatment at T0	6	5	10.88	19.32
apical branchlet · Temperature treatment at T25	5	5	22.48	57.41
apical branchlet · Control at T0	4	2	6.52	22.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	43.79
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	28.29
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	25.36
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	20.09
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.32
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	19.32
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	17.28
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	12.07
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	8.69
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	7.89
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	57.41
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	29.46
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	12.48
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	7.36
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	5.70
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	22.85
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	3.24
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.