Genomic Location: not available for this species
NR annotation: CAB3980217.1, 26S proteasome non-ATPase regulatory subunit 8-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980217.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5RE15 | 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii OX=9601 GN=PSMD8 PE=2 SV=2 |
| P48556 | 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens OX=9606 GN=PSMD8 PE=1 SV=2 |
| Q3SYT7 | 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus OX=9913 GN=PSMD8 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007582 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10075 all species → | CSN8_PSD8_EIF3K | CSN8/PSMD8/EIF3K family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000717 all species → | Domain | Proteasome component (PCI) domain | Interproscan |
| IPR033464 all species → | Domain | CSN8/PSMD8/EIF3K | Interproscan |
| IPR006746 all species → | Family | 26S proteasome non-ATPase regulatory subunit Rpn12 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12387 all species → | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0005838 all species → | Cellular Component | proteasome regulatory particle | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008541 all species → | Cellular Component | proteasome regulatory particle, lid subcomplex | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03031 | PSMD8, RPN12; 26S proteasome regulatory subunit N12 | - | Proteasome | ko03051 | deepkoala |
Transcript abundance of CAB3980217.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
