Genomic Location: not available for this species
NR annotation: CAB3980349.1, PHD finger 12 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980349.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5SPL2 | PHD finger protein 12 OS=Mus musculus OX=10090 GN=Phf12 PE=1 SV=1 |
| Q96QT6 | PHD finger protein 12 OS=Homo sapiens OX=9606 GN=PHF12 PE=1 SV=2 |
| Q04779 | Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RCO1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005166 (this species only) |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16737 all species → | PHF12_MRG_bd | PHD finger protein 12 MRG binding domain | Domain | Interproscan |
| PF00628 all species → | PHD | PHD-finger | Domain | Interproscan |
| PF00498 all species → | FHA | FHA domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR031966 all species → | Domain | PHD finger protein 12, MRG binding domain | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR008984 all species → | Homologous_superfamily | SMAD/FHA domain superfamily | Interproscan |
| IPR019786 all species → | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR000253 all species → | Domain | Forkhead-associated (FHA) domain | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR038098 all species → | Homologous_superfamily | PHD finger protein 12, MRG binding domain superfamily | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46309 all species → | PHD FINGER PROTEIN 12 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000122 all species → | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0003714 all species → | Molecular Function | transcription corepressor activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0070822 all species → | Cellular Component | Sin3-type complex | Interproscan |
| GO:0140110 all species → | Molecular Function | transcription regulator activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26244 | PHF12, RCO1; transcriptional regulatory protein PHF12/RCO1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3980349.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 1.81 | 4.44 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 3.07 | 8.16 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 6.43 | 14.80 | |
| apical branchlet · Control at T0 | 4 | 3 | 1.77 | 5.28 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
