Genomic Location: not available for this species
NR annotation: CAB3980470.1, nuclear transcription factor Y subunit beta-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980470.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P25207 | Nuclear transcription factor Y subunit beta OS=Gallus gallus OX=9031 GN=NFYB PE=2 SV=2 |
| Q32KW0 | Nuclear transcription factor Y subunit beta OS=Bos taurus OX=9913 GN=NFYB PE=2 SV=1 |
| P25208 | Nuclear transcription factor Y subunit beta OS=Homo sapiens OX=9606 GN=NFYB PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005295 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00808 all species → | CBFD_NFYB_HMF | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009072 all species → | Homologous_superfamily | Histone-fold | Interproscan |
| IPR027113 all species → | Family | Transcription factor NFYB/HAP3 | Interproscan |
| IPR003956 all species → | Conserved_site | Transcription factor, NFYB/HAP3, conserved site | Interproscan |
| IPR003958 all species → | Domain | Transcription factor CBF/NF-Y/archaeal histone domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11064 all species → | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046982 all species → | Molecular Function | protein heterodimerization activity | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0001228 all species → | Molecular Function | DNA-binding transcription activator activity, RNA polymerase II-specific | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016602 all species → | Cellular Component | CCAAT-binding factor complex | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08065 | NFYB, HAP3; nuclear transcription Y subunit beta | - | Transcription factors | ko03000 | deepkoala |
Transcript abundance of CAB3980470.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 27.11 | 63.62 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 14.47 | 50.73 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 3.86 | 9.27 | |
| apical branchlet · Control at T0 | 4 | 2 | 5.67 | 17.59 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
