Genomic Location: not available for this species
NR annotation: CAB3980471.1, ubiquitin 4A [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980471.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7ZWB2 | Ubiquitin-like protein 4A OS=Danio rerio OX=7955 GN=ubl4a PE=2 SV=1 |
| B5X9S9 | Ubiquitin-like protein 4A-B OS=Salmo salar OX=8030 GN=ubl4ab PE=2 SV=1 |
| B5XFI8 | Ubiquitin-like protein 4A-A OS=Salmo salar OX=8030 GN=ubl4aa PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000491 (this species only) · gene tree & orthology |
| Ubiquitin family | ULD|UBL|NEDD8 · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_PIM · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17840 all species → | Tugs | Tethering Ubl4a to BAGS domain | Domain | Interproscan |
| PF00240 all species → | ubiquitin | Ubiquitin family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000626 all species → | Domain | Ubiquitin-like domain | Interproscan |
| IPR041421 all species → | Domain | Ubl4, C-terminal TUGS domain | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR019956 all species → | Domain | Ubiquitin domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46555 all species → | UBIQUITIN-LIKE PROTEIN 4A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006620 all species → | Biological Process | post-translational protein targeting to endoplasmic reticulum membrane | Interproscan |
| GO:0051087 all species → | Molecular Function | protein-folding chaperone binding | Interproscan |
| GO:0071816 all species → | Biological Process | tail-anchored membrane protein insertion into ER membrane | Interproscan |
| GO:0071818 all species → | Cellular Component | BAT3 complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23388 | UBL4; ubiquitin-like protein 4 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of CAB3980471.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 35.32 | 99.38 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 7.85 | 35.33 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 1.82 | 9.09 | |
| apical branchlet · Control at T0 | 4 | 1 | 4.56 | 18.23 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
