Genomic Location: not available for this species
NR annotation: CAB3980551.1, transcriptional SWT1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980551.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5T5J6 | Transcriptional protein SWT1 OS=Homo sapiens OX=9606 GN=SWT1 PE=1 SV=1 |
| Q9DBQ9 | Transcriptional protein SWT1 OS=Mus musculus OX=10090 GN=Swt1 PE=2 SV=3 |
| Q86US8 | Telomerase-binding protein EST1A OS=Homo sapiens OX=9606 GN=SMG6 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004303 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00397 all species → | WW | WW domain | Domain | Interproscan |
| PF13638 all species → | PIN_4 | PIN domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052626 all species → | Family | SWT1 Transcriptional Regulator | Interproscan |
| IPR001202 all species → | Domain | WW domain | Interproscan |
| IPR002716 all species → | Domain | PIN domain | Interproscan |
| IPR036020 all species → | Homologous_superfamily | WW domain superfamily | Interproscan |
| IPR029060 all species → | Homologous_superfamily | PIN-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16161 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
CAB3980551.1.Transcript abundance of CAB3980551.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
