Genomic Location: not available for this species
NR annotation: CAB3980703.1, Argininosuccinate synthase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980703.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q66I24 | Argininosuccinate synthase OS=Danio rerio OX=7955 GN=ass1 PE=2 SV=1 |
| P00966 | Argininosuccinate synthase OS=Homo sapiens OX=9606 GN=ASS1 PE=1 SV=2 |
| P14568 | Argininosuccinate synthase OS=Bos taurus OX=9913 GN=ASS1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003969 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00764 all species → | Arginosuc_synth | Arginosuccinate synthase N-terminal HUP domain | Domain | Interproscan |
| PF20979 all species → | Arginosuc_syn_C | Arginosuccinate synthase C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018223 all species → | Conserved_site | Argininosuccinate synthase, conserved site | Interproscan |
| IPR023434 all species → | Family | Argininosuccinate synthase, type 1 subfamily | Interproscan |
| IPR024074 all species → | Homologous_superfamily | Argininosuccinate synthetase, catalytic/multimerisation domain body | Interproscan |
| IPR048267 all species → | Domain | Arginosuccinate synthase-like, N-terminal domain | Interproscan |
| IPR001518 all species → | Family | Argininosuccinate synthase | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR048268 all species → | Domain | Arginosuccinate synthase C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11587 all species → | ARGININOSUCCINATE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004055 all species → | Molecular Function | argininosuccinate synthase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006526 all species → | Biological Process | L-arginine biosynthetic process | Interproscan |
| GO:0000050 all species → | Biological Process | urea cycle | Interproscan |
| GO:0000053 all species → | Biological Process | argininosuccinate metabolic process | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01940 | argG, ASS1; argininosuccinate synthase | EC:6.3.4.5 | Exosome | ko04147 | deepkoala |
Transcript abundance of CAB3980703.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 99.27 | 147.64 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 53.38 | 163.22 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 18.79 | 59.50 | |
| apical branchlet · Control at T0 | 4 | 3 | 40.55 | 100.32 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
