Genomic Location: not available for this species
NR annotation: CAB3980810.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980810.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 |
| Q96RL7 | Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2 |
| Q709C8 | Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000772 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06650 all species → | VPS13_VAB | Vacuolar-sorting associated protein 13, adaptor binding domain | Domain | Interproscan |
| PF16909 all species → | VPS13_DH-like | Vacuolar-sorting-associated 13 protein, DH-like domain | Family | Interproscan |
| PF21679 all species → | VPS13_C | Intermembrane lipid transfer protein VPS13, C-terminal | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF09333 all species → | ATG2-VPS13_C | ATG2/VPS13, C terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026847 all species → | Family | Vacuolar protein sorting-associated protein 13 | Interproscan |
| IPR009543 all species → | Domain | Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain | Interproscan |
| IPR031645 all species → | Domain | Vacuolar protein sorting-associated protein 13, DH-like domain | Interproscan |
| IPR049424 all species → | Domain | Intermembrane lipid transfer protein VPS13, C-terminal | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR015412 all species → | Domain | Atg2/VPS13, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16166 all species → | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006623 all species → | Biological Process | protein targeting to vacuole | Interproscan |
| GO:0019898 all species → | Cellular Component | extrinsic component of membrane | Interproscan |
| GO:0045053 all species → | Biological Process | protein retention in Golgi apparatus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19525 | VPS13A_C; vacuolar protein sorting-associated protein 13A/C | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB3980810.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 6.66 | 12.29 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 8.97 | 17.06 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 3.27 | 12.24 | |
| apical branchlet · Control at T0 | 4 | 3 | 5.99 | 17.94 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
