Genomic Location: not available for this species
NR annotation: CAB3980828.1, probable U3 small nucleolar RNA-associated 7 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3980828.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9P4X3 | Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp7 PE=3 SV=1 |
| Q9Z0H1 | WD repeat-containing protein 46 OS=Mus musculus OX=10090 GN=Wdr46 PE=2 SV=1 |
| O15213 | WD repeat-containing protein 46 OS=Homo sapiens OX=9606 GN=WDR46 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005689 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08149 all species → | BING4CT | BING4CT (NUC141) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012952 all species → | Domain | BING4, C-terminal domain | Interproscan |
| IPR040315 all species → | Family | WD repeat-containing protein WDR46/Utp7 | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14085 all species → | WD-REPEAT PROTEIN BING4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000462 all species → | Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0030686 all species → | Cellular Component | 90S preribosome | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14768 | UTP7, WDR46; U3 small nucleolar RNA-associated protein 7 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of CAB3980828.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 16.39 | 55.26 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 13.46 | 31.36 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.34 | 1.71 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.30 | 5.20 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
