Detailed information of CAB3980879.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3980879.1, Pre-mRNA-splicing factor SYF2 [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

 Sequence
No sequence record for CAB3980879.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D198Pre-mRNA-splicing factor SYF2 OS=Mus musculus OX=10090 GN=Syf2 PE=2 SV=1
Q4QRB2Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus OX=10116 GN=Syf2 PE=2 SV=1
Q28G05Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis OX=8364 GN=syf2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007481 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08231
all species →		SYF2SYF2 splicing factorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013260
all species →		FamilymRNA splicing factor SYF2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13264
all species →		GCIP-INTERACTING PROTEIN P29Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000974
all species →		Cellular ComponentPrp19 complexInterproscan
GO:0071013
all species →		Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0071014
all species →		Cellular Componentpost-mRNA release spliceosomal complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12868SYF2; pre-mRNA-splicing factor SYF2-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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