Gene detail

Detailed information of CAB3980986.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3980986.1, phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3980986.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z2V4	Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Mus musculus OX=10090 GN=Pck1 PE=1 SV=1
P07379	Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Rattus norvegicus OX=10116 GN=Pck1 PE=1 SV=1
P05153	Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Gallus gallus OX=9031 GN=PCK1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002266 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00821 all species →	PEPCK_GTP	Phosphoenolpyruvate carboxykinase C-terminal P-loop domain	Domain	Interproscan
PF17297 all species →	PEPCK_N	Phosphoenolpyruvate carboxykinase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008210 all species →	Homologous_superfamily	Phosphoenolpyruvate carboxykinase, N-terminal	Interproscan
IPR008209 all species →	Family	Phosphoenolpyruvate carboxykinase, GTP-utilising	Interproscan
IPR035077 all species →	Domain	Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain	Interproscan
IPR013035 all species →	Homologous_superfamily	Phosphoenolpyruvate carboxykinase, C-terminal	Interproscan
IPR035078 all species →	Domain	Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11561 all species →	PHOSPHOENOLPYRUVATE CARBOXYKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004611 all species →	Molecular Function	phosphoenolpyruvate carboxykinase activity	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0017076 all species →	Molecular Function	purine nucleotide binding	Interproscan
GO:0004613 all species →	Molecular Function	phosphoenolpyruvate carboxykinase (GTP) activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019543 all species →	Biological Process	propionate catabolic process	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0033993 all species →	Biological Process	response to lipid	Interproscan
GO:0042594 all species →	Biological Process	response to starvation	Interproscan
GO:0046327 all species →	Biological Process	glycerol biosynthetic process from pyruvate	Interproscan
GO:0071333 all species →	Biological Process	cellular response to glucose stimulus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01596	E4.1.1.32, pckA, PCK; phosphoenolpyruvate carboxykinase (GTP)	EC:4.1.1.32	Insulin resistance	ko04931	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3980986.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

17TPM > 0

4Conditions

1,434.4Max TPM

177.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	98.39	283.03
apical branchlet · Temperature treatment at T0	6	5	94.76	247.00
apical branchlet · Temperature treatment at T25	5	5	491.22	1,434.44
apical branchlet · Control at T0	4	2	28.42	61.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	283.03
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	163.91
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	83.97
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	34.55
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	24.90
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	247.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	212.06
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	84.08
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	19.14
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	6.32
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	1,434.44
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	403.30
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	297.19
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	244.03
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	77.11
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	61.54
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	52.14
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.