Genomic Location: pcla8_s000372:1176...2233
NR annotation: CAB3981087.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
| UniProt accession | Description |
|---|
| O15050 | TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=TRANK1 PE=1 SV=4 |
| Q8BV79 | TPR and ankyrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Trank1 PE=2 SV=3 |
| Family type | Membership / link |
|---|
| Orthogroup (gene family) | OG0000890 (this species only) |
No Pfam domain signature was detected for CAB3981087.1. This gene does have a gene model — the search simply returned no hit.
No Gene Ontology signature was detected for CAB3981087.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the
Functional Domain Search page, which searches all 148 annotated genomes at once.
No KEGG orthology assignment for CAB3981087.1.
Searching by KO or pathway ID across
all species is available on the
KEGG Pathway page.
Expression pattern (RNA-seq)
Transcript abundance of CAB3981087.1 across
21 RNA-seq samples of Paramuricea clavata.
Values are TPM (transcripts per million) from the StringTie quantification; one bar is one
sample, grouped and coloured by condition, sorted by expression within each group.
21Samples
6TPM > 0
4Conditions
6.8Max TPM
0.7Mean TPM
By condition
| Condition | Samples | TPM > 0 |
Mean TPM | Max TPM | Mean, relative to max |
| apical branchlet · Control at T25 |
6 |
3 |
1.06 |
4.78 |
|
| apical branchlet · Temperature treatment at T0 |
6 |
1 |
0.17 |
1.04 |
|
| apical branchlet · Temperature treatment at T25 |
5 |
1 |
0.17 |
0.83 |
|
| apical branchlet · Control at T0 |
4 |
1 |
1.69 |
6.77 |
|
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
