Gene detail

Detailed information of CAB3981104.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3981104.1, Phosphonopyruvate decarboxylase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3981104.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O86938	Phosphonopyruvate decarboxylase OS=Streptomyces viridochromogenes (strain DSM 40736 / JCM 4977 / BCRC 1201 / Tue 494) OX=591159 GN=ppd PE=1 SV=1
Q54271	Phosphonopyruvate decarboxylase OS=Streptomyces hygroscopicus OX=1912 GN=bcpC PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005532 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02775 all species →	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan
PF02776 all species →	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR017684 all species →	Family	Phosphonopyruvate decarboxylase	Interproscan
IPR011766 all species →	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan
IPR012001 all species →	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR051818 all species →	Family	Thiamine pyrophosphate-dependent decarboxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42818 all species →	SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032923 all species →	Biological Process	organic phosphonate biosynthetic process	Interproscan
GO:0033980 all species →	Molecular Function	phosphonopyruvate decarboxylase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09459	E4.1.1.82; phosphonopyruvate decarboxylase	EC:4.1.1.82	Biosynthesis of various antibiotics	ko00998	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3981104.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

17TPM > 0

4Conditions

173.2Max TPM

54.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	68.65	109.75
apical branchlet · Temperature treatment at T0	6	5	68.83	173.20
apical branchlet · Temperature treatment at T25	5	4	23.03	44.35
apical branchlet · Control at T0	4	3	49.17	128.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	109.75
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	98.30
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	95.60
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	62.21
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	46.03
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	173.20
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	67.75
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	64.72
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	58.23
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	49.06
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	44.35
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	33.58
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	27.11
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	10.10
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	128.97
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	51.35
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	16.37
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.