Genomic Location: not available for this species
NR annotation: CAB3981135.1, TAF6-like RNA polymerase II p300 CBP-associated factor-associated factor 65 kDa subunit 6L, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3981135.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8R2K4 | TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus OX=10090 GN=Taf6l PE=1 SV=1 |
| Q9Y6J9 | TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens OX=9606 GN=TAF6L PE=1 SV=1 |
| Q9MAU3 | Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006248 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02969 all species → | TAF | TATA box binding protein associated factor (TAF) | Domain | Interproscan |
| PF07571 all species → | TAF6_C | TAF6 C-terminal HEAT repeat domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037796 all species → | Family | Transcription initiation factor TFIID subunit 6 | Interproscan |
| IPR009072 all species → | Homologous_superfamily | Histone-fold | Interproscan |
| IPR004823 all species → | Domain | TATA box binding protein associated factor (TAF), histone-like fold domain | Interproscan |
| IPR046344 all species → | Homologous_superfamily | TAF6, C-terminal HEAT repeat domain superfamily | Interproscan |
| IPR011442 all species → | Domain | TAF6, C-terminal HEAT repeat domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10221 all species → | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000124 all species → | Cellular Component | SAGA complex | Interproscan |
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005669 all species → | Cellular Component | transcription factor TFIID complex | Interproscan |
| GO:0006367 all species → | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| GO:0016251 all species → | Molecular Function | RNA polymerase II general transcription initiation factor activity | Interproscan |
| GO:0046695 all species → | Cellular Component | SLIK (SAGA-like) complex | Interproscan |
| GO:0051123 all species → | Biological Process | RNA polymerase II preinitiation complex assembly | Interproscan |
| GO:0046982 all species → | Molecular Function | protein heterodimerization activity | Interproscan |
CAB3981135.1.Transcript abundance of CAB3981135.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
