Genomic Location: not available for this species
NR annotation: CAB3981272.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3981272.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8N1B4 | Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens OX=9606 GN=VPS52 PE=1 SV=1 |
| Q5TJF0 | Vacuolar protein sorting-associated protein 52 homolog OS=Canis lupus familiaris OX=9615 GN=VPS52 PE=3 SV=1 |
| Q8C754 | Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus OX=10090 GN=Vps52 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003151 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20655 all species → | Vps52_C | Vps52, C-terminal | Repeat | Interproscan |
| PF04129 all species → | Vps52_CC | Vps52/Sac2 family, coiled-coil | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR048361 all species → | Domain | Vps52, C-terminal | Interproscan |
| IPR048319 all species → | Domain | Vps52, coiled-coil domain | Interproscan |
| IPR007258 all species → | Family | Vps52 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14190 all species → | SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000938 all species → | Cellular Component | GARP complex | Interproscan |
| GO:0006896 all species → | Biological Process | Golgi to vacuole transport | Interproscan |
| GO:0007041 all species → | Biological Process | lysosomal transport | Interproscan |
| GO:0019905 all species → | Molecular Function | syntaxin binding | Interproscan |
| GO:0032456 all species → | Biological Process | endocytic recycling | Interproscan |
| GO:0042147 all species → | Biological Process | retrograde transport, endosome to Golgi | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20298 | VPS52; vacuolar protein sorting-associated protein 52 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB3981272.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
