Genomic Location: not available for this species
NR annotation: CAB3981430.1, Hydantoin utilization A [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3981430.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002123 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01968 all species → | Hydantoinase_A | Hydantoinase/oxoprolinase | Family | Interproscan |
| PF20906 all species → | DUF917_C | Protein of unknown function DUF917, C-terminal | Domain | Interproscan |
| PF06032 all species → | DUF917 | Protein of unknown function (DUF917), N-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002821 all species → | Domain | Hydantoinase A/oxoprolinase | Interproscan |
| IPR048350 all species → | Domain | DUF917, C-terminal domain | Interproscan |
| IPR027479 all species → | Homologous_superfamily | DUF917, N-terminal domain superfamily | Interproscan |
| IPR045079 all species → | Family | Oxoprolinase family | Interproscan |
| IPR043129 all species → | Homologous_superfamily | ATPase, nucleotide binding domain | Interproscan |
| IPR010318 all species → | Domain | DUF917, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11365 all species → | 5-OXOPROLINASE RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006749 all species → | Biological Process | glutathione metabolic process | Interproscan |
| GO:0017168 all species → | Molecular Function | 5-oxoprolinase (ATP-hydrolyzing) activity | Interproscan |
CAB3981430.1.Transcript abundance of CAB3981430.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
