Genomic Location: not available for this species
NR annotation: CAB3981447.1, leucine-rich repeats and immunoglobulin-like domains 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3981447.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3UQ28 | Peroxidasin homolog OS=Mus musculus OX=10090 GN=Pxdn PE=1 SV=2 |
| Q90W79 | Contactin-5 OS=Gallus gallus OX=9031 GN=CNTN5 PE=1 SV=1 |
| P98160 | Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005677 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13927 all species → | Ig_3 | Immunoglobulin domain | Domain | Interproscan |
| PF07679 all species → | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| PF13855 all species → | LRR_8 | Leucine rich repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR013098 all species → | Domain | Immunoglobulin I-set | Interproscan |
| IPR001611 all species → | Repeat | Leucine-rich repeat | Interproscan |
| IPR036179 all species → | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR003598 all species → | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR007110 all species → | Domain | Immunoglobulin-like domain | Interproscan |
| IPR003591 all species → | Repeat | Leucine-rich repeat, typical subtype | Interproscan |
| IPR050467 all species → | Family | Leucine-rich repeat and fibronectin type-III domain-containing | Interproscan |
| IPR003599 all species → | Domain | Immunoglobulin subtype | Interproscan |
| IPR000372 all species → | Domain | Leucine-rich repeat N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45842 all species → | SYNAPTIC ADHESION-LIKE MOLECULE SALM | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24610 | LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3 | - | Signaling proteins | - | deepkoala |
Transcript abundance of CAB3981447.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 31.28 | 73.69 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 26.59 | 59.12 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 5.49 | 24.88 | |
| apical branchlet · Control at T0 | 4 | 3 | 20.42 | 45.64 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
