Genomic Location: not available for this species
NR annotation: CAB3981576.1, Transposable element P transposase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3981577.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001809 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21787 all species → | TNP-like_RNaseH_N | TNP-like, RNase H N-terminal domain | Domain | Interproscan |
| PF12017 all species → | Tnp_P_element | Transposable element P transposase-like, HTH domain | Domain | Interproscan |
| PF21788 all species → | TNP-like_GBD | TNP-like, GTP-binding insertion domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR048365 all species → | Domain | Transposable element P transposase-like, RNase H domain, N-terminal | Interproscan |
| IPR021896 all species → | Domain | THAP9-like, helix-turn-helix domain | Interproscan |
| IPR048366 all species → | Domain | Transposable element P transposase-like, GTP-binding insertion domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48367 all species → | - | Interproscan |
CAB3981577.1. This gene does have a gene model — the search simply returned no hit.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23209 | THAP9; DNA transposase THAP9 | EC:2.7.7.- | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3981577.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
