Genomic Location: not available for this species
NR annotation: CAB3981584.1, importin-13 isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3981584.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8K0C1 | Importin-13 OS=Mus musculus OX=10090 GN=Ipo13 PE=1 SV=1 |
| O94829 | Importin-13 OS=Homo sapiens OX=9606 GN=IPO13 PE=1 SV=3 |
| A7YWD2 | Importin-13 OS=Bos taurus OX=9913 GN=IPO13 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005866 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03810 all species → | IBN_N | Importin-beta N-terminal domain | Repeat | Interproscan |
| PF18773 all species → | Importin_rep | Importin 13 repeat | Repeat | Interproscan |
| PF08389 all species → | Xpo1 | Exportin 1-like protein | Repeat | Interproscan |
| PF18806 all species → | Importin_rep_3 | Importin 13 repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051345 all species → | Family | Importin beta-like nuclear transport receptors | Interproscan |
| IPR001494 all species → | Domain | Importin-beta, N-terminal domain | Interproscan |
| IPR040709 all species → | Repeat | Importin 13, repeat 1 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR013598 all species → | Domain | Exportin-1/Importin-beta-like | Interproscan |
| IPR040520 all species → | Repeat | Importin 13 repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12363 all species → | TRANSPORTIN 3 AND IMPORTIN 13 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006606 all species → | Biological Process | protein import into nucleus | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0031267 all species → | Molecular Function | small GTPase binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25202 | IPO13, RANBP13; importin-13 | - | Nucleocytoplasmic transport | ko03013 | deepkoala |
Transcript abundance of CAB3981584.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 12.58 | 28.41 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 7.63 | 28.66 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.97 | 4.87 | |
| apical branchlet · Control at T0 | 4 | 3 | 4.84 | 11.14 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
