Gene detail

Detailed information of CAB3981774.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3981774.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3981774.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJR9	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Gallus gallus OX=9031 GN=TAF1B PE=2 SV=2
F1R3W0	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Danio rerio OX=7955 GN=taf1b PE=2 SV=1
Q1JQD6	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Bos taurus OX=9913 GN=TAF1B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004741 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20644 all species →	Rrn7_cyclin_N	Rrn7/TAF1B, N-terminal cyclin domain	Domain	Interproscan
PF20645 all species →	Rrn7_cyclin_C	Rrn7/TAF1B, C-terminal cyclin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048540 all species →	Domain	Rrn7/TAF1B, N-terminal cyclin domain	Interproscan
IPR048538 all species →	Domain	Rrn7/TAF1B, C-terminal cyclin domain	Interproscan
IPR033599 all species →	Family	RNA polymerase I transcription initiation factor TAF1B/Rrn7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31576 all species →	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001164 all species →	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001188 all species →	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0005668 all species →	Cellular Component	RNA polymerase transcription factor SL1 complex	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042790 all species →	Biological Process	nucleolar large rRNA transcription by RNA polymerase I	Interproscan
GO:0070860 all species →	Cellular Component	RNA polymerase I core factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15213	TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3981774.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

8TPM > 0

4Conditions

6.7Max TPM

0.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	2.15	6.72
apical branchlet · Temperature treatment at T0	6	2	0.62	2.04
apical branchlet · Temperature treatment at T25	5	1	0.23	1.17
apical branchlet · Control at T0	4	1	0.31	1.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	6.72
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.29
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.05
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.84
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.04
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.66
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	1.17
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.26
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.