Genomic Location: not available for this species
NR annotation: CAB3981846.1, DNA (cytosine-5)-methyltransferase 3A-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3981846.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q4W5Z4 | DNA (cytosine-5)-methyltransferase 3A OS=Gallus gallus OX=9031 GN=DNMT3A PE=2 SV=1 |
| O88508 | DNA (cytosine-5)-methyltransferase 3A OS=Mus musculus OX=10090 GN=Dnmt3a PE=1 SV=2 |
| Q1LZ53 | DNA (cytosine-5)-methyltransferase 3A OS=Rattus norvegicus OX=10116 GN=Dnmt3a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004545 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00145 all species → | DNA_methylase | C-5 cytosine-specific DNA methylase | Domain | Interproscan |
| PF17980 all species → | ADD_DNMT3 | Cysteine rich ADD domain in DNMT3 | Domain | Interproscan |
| PF21255 all species → | ADDz_Dnmt3b | DNMT3, ADD PHD zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001525 all species → | Family | C-5 cytosine methyltransferase | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR025766 all species → | Domain | ADD domain | Interproscan |
| IPR040552 all species → | Domain | DNMT3, cysteine rich ADD domain, GATA1-like zinc finger | Interproscan |
| IPR049554 all species → | Domain | DNMT3, ADD domain, PHD zinc finger | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23068 all species → | DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
CAB3981846.1.Transcript abundance of CAB3981846.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
