Gene detail

Detailed information of CAB3982158.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3982158.1, hexokinase HKDC1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3982158.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P52792	Hexokinase-4 OS=Mus musculus OX=10090 GN=Gck PE=1 SV=1
P35557	Hexokinase-4 OS=Homo sapiens OX=9606 GN=GCK PE=1 SV=1
P17712	Hexokinase-4 OS=Rattus norvegicus OX=10116 GN=Gck PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002472 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00349 all species →	Hexokinase_1	Hexokinase	Domain	Interproscan
PF03727 all species →	Hexokinase_2	Hexokinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022672 all species →	Domain	Hexokinase, N-terminal	Interproscan
IPR001312 all species →	Family	Hexokinase	Interproscan
IPR022673 all species →	Domain	Hexokinase, C-terminal	Interproscan
IPR019807 all species →	Binding_site	Hexokinase, binding site	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19443 all species →	HEXOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016773 all species →	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan
GO:0001678 all species →	Biological Process	intracellular glucose homeostasis	Interproscan
GO:0004396 all species →	Molecular Function	hexokinase activity	Interproscan
GO:0005536 all species →	Molecular Function	D-glucose binding	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0004340 all species →	Molecular Function	glucokinase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0008865 all species →	Molecular Function	fructokinase activity	Interproscan
GO:0046835 all species →	Biological Process	carbohydrate phosphorylation	Interproscan
GO:0051156 all species →	Biological Process	glucose 6-phosphate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00844	HK; hexokinase	EC:2.7.1.1	Glycolysis / Gluconeogenesis	ko00010	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3982158.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

9TPM > 0

4Conditions

46.5Max TPM

11.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	19.91	46.50
apical branchlet · Temperature treatment at T0	6	3	9.84	32.60
apical branchlet · Temperature treatment at T25	5	1	4.10	20.48
apical branchlet · Control at T0	4	1	11.58	46.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	46.50
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	36.29
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	21.73
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	14.94
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	32.60
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	18.44
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	8.02
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	20.48
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	46.33
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.