Genomic Location: not available for this species
NR annotation: CAB3982897.1, Poly [ADP-ribose] polymerase 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3982898.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P26446 | Poly [ADP-ribose] polymerase 1 OS=Gallus gallus OX=9031 GN=PARP1 PE=1 SV=2 |
| P11103 | Poly [ADP-ribose] polymerase 1 OS=Mus musculus OX=10090 GN=Parp1 PE=1 SV=3 |
| P27008 | Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus OX=10116 GN=Parp1 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001433 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21728 all species → | PADR1_N | PADR1, N-terminal helical domain | Domain | Interproscan |
| PF02877 all species → | PARP_reg | Poly(ADP-ribose) polymerase, regulatory domain | Domain | Interproscan |
| PF00644 all species → | PARP | Poly(ADP-ribose) polymerase catalytic domain | Family | Interproscan |
| PF05406 all species → | WGR | WGR domain | Domain | Interproscan |
| PF08063 all species → | PADR1_Zn_ribbon | PADR1 domain, zinc ribbon fold | Domain | Interproscan |
| PF00533 all species → | BRCT | BRCA1 C Terminus (BRCT) domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008893 all species → | Domain | WGR domain | Interproscan |
| IPR036616 all species → | Homologous_superfamily | Poly(ADP-ribose) polymerase, regulatory domain superfamily | Interproscan |
| IPR049296 all species → | Domain | PARP1-like, PADR1 domain, N-terminal helical subdomain | Interproscan |
| IPR036930 all species → | Homologous_superfamily | WGR domain superfamily | Interproscan |
| IPR004102 all species → | Domain | Poly(ADP-ribose) polymerase, regulatory domain | Interproscan |
| IPR001357 all species → | Domain | BRCT domain | Interproscan |
| IPR050800 all species → | Family | ADP-ribosyltransferase diphtheria toxin-like | Interproscan |
| IPR012317 all species → | Domain | Poly(ADP-ribose) polymerase, catalytic domain | Interproscan |
| IPR036420 all species → | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR001510 all species → | Domain | Zinc finger, PARP-type | Interproscan |
| IPR038650 all species → | Homologous_superfamily | PADR1, C-terminal domain superfamily | Interproscan |
| IPR012982 all species → | Domain | PARP1-like, PADR1 domain, zinc ribbon fold | Interproscan |
| IPR036957 all species → | Homologous_superfamily | Zinc finger, PARP-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10459 all species → | DNA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003950 all species → | Molecular Function | NAD+-protein poly-ADP-ribosyltransferase activity | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0006302 all species → | Biological Process | double-strand break repair | Interproscan |
| GO:0070212 all species → | Biological Process | protein poly-ADP-ribosylation | Interproscan |
| GO:1990404 all species → | Molecular Function | NAD+-protein ADP-ribosyltransferase activity | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24070 | PARP1; poly [ADP-ribose] polymerase 1 | EC:2.4.2.30 | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of CAB3982898.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
