Gene detail

Detailed information of CAB3983509.1 in Paramuricea clavata

Genomic Location: pcla8_s000647:39182...41413
NR annotation: CAB3983509.1, dual specificity phosphatase CDC14B isoform X8 [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PACLA_8A053678

ATGGAAGTCCTCCTAGAACTTGTACCTAACCGTGTCTTTTTTCAAATCCGTCCGGACAACCCTTCGAGTGGAATTCACATGAACGAGAGGGATGGCTTCATTTACCATTACCACAGTATGGACAACTTATATATATCCGTGAAAATACGCAAATATTTTGGACCAATGACGTTATCGAACATACATCGCCATTGTGTTTTGGTAGACAAGAGTTTAAAGCACACCGCAGGAAGACATTTGTTCTACACTAACAGTTTCGAGACGCTTGGCTACCAGCAGAAACGTACCAGCGCCATTTTCTTAATGGGGTGCTATCTTGTACTGCGGCAAAATTTTACTCCGGAGCAGACAAAAGACATGTTACATGAAGTAACTGGGAGTGTGACACCTTTCACGGATATGGAAGGCTCGACGGCGCATGCTTTGACTCTACTAGACTGTTGGCGAGCTCTGTACCATGCTATGGTAGTCAATCAATGGTTCCGAAAACGAGACTTTGACATGGTCATTGACCTGTGCGATGGTAGCGATGAGGTCATAAACTGGGTCGTACCAGGACGGCTACTGGCCCTTGAGGACCCTAAGGAACCACGGTACATGGGACGAGGTCCAAGGGTCCGTTATTCTATCGTCGAAATATTCAAACAACACAAAGTGAGCACGGTCGTCCGACTGAATGGGAGGGACTACGAGTACCGTACGAGCTATGGACAGCCTTACGACTCGGAAGAGTTCGTCTGTCGAGCGATAAAACATTACGATATTTTTTTCAAAGACGGCGGTATCCCTTCGGAATCGCAACTTAACACTTTCTTAAAGATTGTCAAGAAAGCACATCATCCTATTGCAGTACACTGTCATGCCGGCCGAGGGCGTACTGGGACTATGCTCGCATGTTCACTGGTACGATTTTGGGGGTTCGAAGCAGTTCATGCAATAGCCTGGGTTCGAATATGTCGTGCGGCTTGCGTCGTTGGAATACAACAGGGATTTGTAAAAATGGTCGAAAACAGTTTGCGGGAAAAGGCGTGTACCTCGACCTCGGGGCAAGCTGGGAACCAAACCCACGGTGTGCACACCCCCACCAAATATTTACGACAGATTCATCTCGTTGCCCCACCGCGTGTACAAAGACGGCCGACGCCTACGCGATCAAACCCTTGCCCGGCGAAGTCGACCTGCGACAAAAAATCAGAACAAACCGAACACTCCACCGAGAAAAGCTTAAAACCTCCACAGAAGATTACGGTCCTGCCGATCAGCGGTGGTATGAGCGGAACACAACTGAGGAGACCGAGAACTAAGGTCCACACGAAGGTGCCGAATAATAAAACAAGAGTCTGCCACGAGCTGACATTGAGGAATAACTGGCGCAAATCTGAACAAAAACCACAGGGAATAAGAGCGAAGTCGCAGAAAAAGACCAAGACTACAGAACCAGCTAACGTTAACGGCGTGACCAATGTCTCGCTAAATACGAATACACAACTGAGACTGAGCGGTGTTCTGGATTTAACTCTACTCAAAAACATGCATATGTTTCAAGAGCTCGAACCGAAAAACAAGTACCTACGGGCGAACATCTCCGATAAGGTTTCGTGTTACATCGCGAAGCCGGGACAGGGGAACTATTTCCATCAACCAAAAAGACATGCTGTGGACACGGCTAAGGTCGCCAGGCTAGAAACGATGCTGCATTTTCAAAGTAAACCAACGAAATGCGAACAGTACGAGTTGAAACAAAAAGTAAGCAAAGCTCAAGATGACCTTGCGAAAATTCATTCGTCCCGACCGCAGATAAAGGGGAGTAAATCTTCTATTCCGTTTGTGAAGGCGCCTATCAAGTACTCGAGTTATCAGCCGACTTTCGACCACCTTACCAAGTTACTTAGTTTTGATAGAGAAAGCAAATCTCCTGTTTCAAGTTGTGGAAAAGACTATAAAATCCCCATTGTTTCAACCGTAAACGGCGACAAAGGTCAAAATCCCAGAGTCGAGAAAACCGTTTCGCGCAACAAGACCGAGCGCCGTTTGGCCTGGGACGAGCCTGAAGTAAGCCCGCAGTGTGCAAAAACTGGTGGTGTCAAGGTACTTCGTGACAACAAGAAAGATAACGTGGTTTTAAATGATTTTCTGGAGAAACATAGACAAACGTTGTTTGTATCAAAGACTGCCAACTGTGCCGGGGGGAATAGAGATAATGGGATTAAAATACGAAATCTACATAGATAA

Transcript

rna-PACLA_8A053678

ATGGAAGTCCTCCTAGAACTTGTACCTAACCGTGTCTTTTTTCAAATCCGTCCGGACAACCCTTCGAGTGGAATTCACATGAACGAGAGGGATGGCTTCATTTACCATTACCACAGTATGGACAACTTATATATATCCGTgaaaatacgcaaatattttgGACCAATGACGTTATCGAACATACATCGCCATTGTGTTTTGGTAGACAAGAGTTTAAAGCACACCGCAGGAAGACATTTGTTCTACACTAACAGTTTCGAGACGCTTGGCTACCAGCAGAAACGTACCAGCGCCATTTTCTTAATGGGGTGCTATCTTGTACTGCGGCAAAATTTTACTCCGGAGCAGACAAAAGacatgttacatgaagtaacTGGGAGTGTGACACCTTTCACGGATATGGAAGGCTCGACGGCGCATGCTTTGACTCTACTAGACTGTTGGCGAGCTCTGTACCATGCTATGGTAGTCAATCAATGGTTCCGAAAACGAGACTTTGACATGGTCATTGACCTGTGCGATGGTAGCGATGAGGTCATAAACTGGGTCGTACCAGGACGGCTACTGGCCCTTGAGGACCCTAAGGAACCACGGTACATGGGACGAGGTCCAAGGGTCCGTTATTCTATCGTCGAAATATTCAAACAACACAAAGTGAGCACGGTCGTCCGACTGAATGGGAGGGACTACGAGTACCGTACGAGCTATGGACAGCCTTACGACTCGGAAGAGTTCGTCTGTCGAGCGATAAAACATTACGATATTTTTTTCAAAGACGGCGGTATCCCTTCGGAATCGCAACTTAACACTTTCTTAAAGATTGTCAAGAAAGCACATCATCCTATTGCAGTACACTGTCATGCCGGCCGAGGGCGTACTGGGACTATGCTCGCATGTTCACTGGTACGATTTTGGGGGTTCGAAGCAGTTCATGCAATAGCCTGGGTTCGAATATGTCGTGCGGCTTGCGTCGTTGGAATACAACAGGGATTTGTAAAAATGGTCGAAAACAGTTTGCGGGAAAAGGCGTGTACCTCGACCTCGGGGCAAGCTGGGAACCAAACCCACGGTGTGCACACCCCCACCAAATATTTACGACAGATTCATCTCGTTGCCCCACCGCGTGTACAAAGACGGCCGACGCCTACGCGATCAAACCCTTGCCCGGCGAAGTCGACCTGCGACAAAAAATCAGAACAAACCGAACACTCCACCGAGAAAAGCTTAAAACCTCCACAGAAGATTACGGTCCTGCCGATCAGCGGTGGTATGAGCGGAACACAACTGAGGAGACCGAGAACTAAGGTCCACACGAAGGTGCCGAATAATAAAACAAGAGTCTGCCACGAGCTGACATTGAGGAATAACTGGCGCAAATCTGAACAAAAACCACAGGGAATAAGAGCGAAGTCGCAGAAAAAGACCAAGACTACAGAACCAGCTAACGTTAACGGCGTGACCAATGTCTCGCTAAATACGAATACACAACTGAGACTGAGCGGTGTTCTGGATTTAACTCTACTCAAAAACATGCATATGTTTCAAGAGCTCGAACCGAAAAACAAGTACCTACGGGCGAACATCTCCGATAAGGTTTCGTGTTACATCGCGAAGCCGGGACAGGGGAACTATTTCCATCAACCAAAAAGACATGCTGTGGACACGGCTAAGGTCGCCAGGCTAGAAACGATGCTGCATTTTCAAAGTAAACCAACGAAATGCGAACAGTACGAGTTGAAACAAAAAGTAAGCAAAGCTCAAGATGACCTTGCGAAAATTCATTCGTCCCGACCGCAGATAAAGGGGAGTAAATCTTCTATTCCGTTTGTGAAGGCGCCTATCAAGTACTCGAGTTATCAGCCGACTTTCGACCACCTTACCAAGTTACTTAGTTTTGATAGAGAAAGCAAATCTCCTGTTTCAAGTTGTGGAAAAGACTATAAAATCCCCATTGTTTCAACCGTAAACGGCGACAAAGGTCAAAATCCCAGAGTCGAGAAAACCGTTTCGCGCAACAAGACCGAGCGCCGTTTGGCCTGGGACGAGCCTGAAGTAAGCCCGCAGTGTGCAAAAACTGGTGGTGTCAAGGTACTTCGTGACAACAAGAAAGATAACGTGGTTTTAAATGATTTTCTGGAGAAACATAGACAAACGTTGTTTGTATCAAAGACTGCCAACTGTGCCGGGGGGAATAGAGATAATGGGATTAAAATACGAAATCTACATAGAtaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4D256	Dual specificity protein phosphatase CDC14C OS=Homo sapiens OX=9606 GN=CDC14C PE=1 SV=3
O60729	Dual specificity protein phosphatase CDC14B OS=Homo sapiens OX=9606 GN=CDC14B PE=1 SV=1
Q6PFY9	Dual specificity protein phosphatase CDC14B OS=Mus musculus OX=10090 GN=Cdc14b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002293 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14671 all species →	DSPn	Dual specificity protein phosphatase, N-terminal half	Domain	Interproscan
PF14566 all species →	PTPlike_phytase	Inositol hexakisphosphate	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR029260 all species →	Domain	Dual specificity/tyrosine protein phosphatase, N-terminal	Interproscan
IPR050561 all species →	Family	Protein Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23339 all species →	TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007096 all species →	Biological Process	regulation of exit from mitosis	Interproscan
GO:0032467 all species →	Biological Process	positive regulation of cytokinesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06639	CDC14; cell division cycle 14	EC:3.1.3.16 EC:3.1.3.48	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.