Genomic Location: not available for this species
NR annotation: CAB3983593.1, strawberry notch homolog 1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3983593.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A3KN83 | Protein strawberry notch homolog 1 OS=Homo sapiens OX=9606 GN=SBNO1 PE=1 SV=1 |
| Q689Z5 | Protein strawberry notch homolog 1 OS=Mus musculus OX=10090 GN=Sbno1 PE=1 SV=2 |
| Q5BJL5 | Protein strawberry notch homolog 1 OS=Rattus norvegicus OX=10116 GN=Sbno1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000611 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13872 all species → | AAA_34 | P-loop containing NTP hydrolase pore-1 | Domain | Interproscan |
| PF13871 all species → | Helicase_C_4 | C-terminal domain on Strawberry notch homologue | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039187 all species → | Domain | Strawberry notch, AAA domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR026937 all species → | Domain | Strawberry notch, helicase C domain | Interproscan |
| IPR026741 all species → | Family | Protein strawberry notch | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12706 all species → | STRAWBERRY NOTCH-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0031490 all species → | Molecular Function | chromatin DNA binding | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26273 | SBNO, SNO, FGT1; protein strawberry notch | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3983593.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
