Genomic Location: not available for this species
NR annotation: CAB3983640.1, phosphatase Slingshot homolog 2-like isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3983640.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8WYL5 | Protein phosphatase Slingshot homolog 1 OS=Homo sapiens OX=9606 GN=SSH1 PE=1 SV=2 |
| Q76I79 | Protein phosphatase Slingshot homolog 1 OS=Mus musculus OX=10090 GN=Ssh1 PE=1 SV=1 |
| Q76I76 | Protein phosphatase Slingshot homolog 2 OS=Homo sapiens OX=9606 GN=SSH2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003902 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00782 all species → | DSPc | Dual specificity phosphatase, catalytic domain | Domain | Interproscan |
| PF08766 all species → | DEK_C | DEK C terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000340 all species → | Domain | Dual specificity phosphatase, catalytic domain | Interproscan |
| IPR020422 all species → | Domain | Dual specificity protein phosphatase domain | Interproscan |
| IPR029021 all species → | Homologous_superfamily | Protein-tyrosine phosphatase-like | Interproscan |
| IPR014876 all species → | Domain | DEK, C-terminal | Interproscan |
| IPR016130 all species → | Active_site | Protein-tyrosine phosphatase, active site | Interproscan |
| IPR043587 all species → | Family | Protein phosphatase Slingshot-like | Interproscan |
| IPR000387 all species → | Domain | Tyrosine-specific protein phosphatases domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45864 all species → | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016311 all species → | Biological Process | dephosphorylation | Interproscan |
| GO:0006470 all species → | Biological Process | protein dephosphorylation | Interproscan |
| GO:0003779 all species → | Molecular Function | actin binding | Interproscan |
| GO:0004721 all species → | Molecular Function | phosphoprotein phosphatase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016791 all species → | Molecular Function | phosphatase activity | Interproscan |
| GO:0030036 all species → | Biological Process | actin cytoskeleton organization | Interproscan |
| GO:0030837 all species → | Biological Process | negative regulation of actin filament polymerization | Interproscan |
CAB3983640.1.Transcript abundance of CAB3983640.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
