Genomic Location: not available for this species
NR annotation: CAB3983648.1, DNA ligase 4 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3983648.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5R6L3 | DNA ligase 4 OS=Pongo abelii OX=9601 GN=LIG4 PE=2 SV=1 |
| P49917 | DNA ligase 4 OS=Homo sapiens OX=9606 GN=LIG4 PE=1 SV=2 |
| Q8BTF7 | DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002928 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01068 all species → | DNA_ligase_A_M | ATP dependent DNA ligase domain | Domain | Interproscan |
| PF04675 all species → | DNA_ligase_A_N | DNA ligase N terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012310 all species → | Domain | DNA ligase, ATP-dependent, central | Interproscan |
| IPR036599 all species → | Homologous_superfamily | DNA ligase, ATP-dependent, N-terminal domain superfamily | Interproscan |
| IPR029710 all species → | Family | DNA ligase 4 | Interproscan |
| IPR012308 all species → | Domain | DNA ligase, ATP-dependent, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45997 all species → | DNA LIGASE 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003910 all species → | Molecular Function | DNA ligase (ATP) activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0006310 all species → | Biological Process | DNA recombination | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005958 all species → | Cellular Component | DNA-dependent protein kinase-DNA ligase 4 complex | Interproscan |
| GO:0006297 all species → | Biological Process | nucleotide-excision repair, DNA gap filling | Interproscan |
| GO:0006303 all species → | Biological Process | double-strand break repair via nonhomologous end joining | Interproscan |
| GO:0032807 all species → | Cellular Component | DNA ligase IV complex | Interproscan |
| GO:0051103 all species → | Biological Process | DNA ligation involved in DNA repair | Interproscan |
CAB3983648.1.Transcript abundance of CAB3983648.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
